Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| KIRP | rs6483847 | chr11:22361521 | A/T | 5.86E-6 | 208 | 14.85 | 18.03 | 4.07 | KM Plot |
| KIRP | rs6484746 | chr11:34903671 | C/T | 4.21E-12 | 214 | 17.08 | 12.6 | 5.57 | KM Plot |
| KIRP | rs6497408 | chr16:19832589 | G/A | 0.000113 | 208 | 15.33 | 19.45 | 13.03 | KM Plot |
| KIRP | rs6497409 | chr16:19836346 | G/C | 8.12E-7 | 208 | 14.1 | 19.53 | 12.23 | KM Plot |
| KIRP | rs6500330 | chr16:48182822 | T/A | 0.00014 | 204 | 17.03 | 14.85 | 10.83 | KM Plot |
| KIRP | rs6500620 | chr16:4647810 | A/G | 5.7E-7 | 210 | 10.83 | 16.43 | 16.73 | KM Plot |
| KIRP | rs650359 | chr6:4164620 | T/C | 8.27E-5 | 212 | 14.1 | 19.3 | 12.38 | KM Plot |
| KIRP | rs6504595 | chr17:47187056 | A/C | 7.77E-5 | 214 | 5.57 | 19.27 | 16.97 | KM Plot |
| KIRP | rs6518275 | chr21:47599818 | C/T | 2.07E-8 | 211 | 16.5 | 14.33 | 1.9 | KM Plot |
| KIRP | rs6531849 | chr4:76615483 | G/A | 0.000298 | 211 | 14.32 | 17.03 | 17.23 | KM Plot |
| KIRP | rs6541371 | chr1:95281950 | A/G | 6.55E-7 | 213 | 11.43 | 15.9 | 16.5 | KM Plot |
| KIRP | rs6564389 | chr16:77149082 | G/C | 0.000178 | 214 | 16.53 | 13.73 | 17.08 | KM Plot |
| KIRP | rs6564390 | chr16:77149346 | G/T | 0.000525 | 214 | 17.92 | 13.67 | 17.08 | KM Plot |
| KIRP | rs6564393 | chr16:77149834 | C/T | 0.000474 | 214 | 17.92 | 13.38 | 17.08 | KM Plot |
| KIRP | rs6584357 | chr10:102050344 | A/T | 5.7E-6 | 213 | 15.88 | 19.83 | 3.6 | KM Plot |